Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915481.1_cds_XP_016465280.1_58249
CDS Infomation

[gene=LOC107788135] [db_xref=GeneID:107788135] [protein=exopolygalacturonase-like] [protein_id=XP_016465280.1] [location=complement(join(90010..90243,90473..90985,92307..92615,92906..93052))] [gbkey=CDS]
Sequence

ATGGTTTCATTGGCTTCTGCAACTTTTGGTGTGTGCTTGTTTGTATTCTTGAGCATAGCT
AATGCCCAATATTATAATTCACCACTTAAGTTCTTCAATGTTTTGGATTATGGTGCAGTT
GCTGATGAGAAGAGAGATAATAGTCAGGCATTTTTAAAGGCATGGGAAGATGCTTGTCAA
TGGAGAGGAAGGAGTATGGTTTTAATTCCATATGGAACTTACATGTTGAGGTCAGTTTCA
TTTGAGGGTCCATGCAGGAGTTTAATGAGATTTGTAATAAAAGGGGTTCTCAAAGCTCCC
ACAAGTCCATCATTGTTCAACACAAACACATGGATTGGTTTTCGTTACATAAATGGGCTA
GTTGTTAAAGGTGGTGGCTATTTGGATGGCCAAGGTGCTTCTGCTTGGCCATATAACGAT
TGTTCCAAGAACCCCCATTGCATGCCTCTTCCTGTGACTTTGAGATTCGATTTCGTGACG
AATTCAAGAATCCATCATTTGAGATCAATCAACAGCAAGAACTCCCACATAAACCTCTTT
GCTTGCAACAACATAAACATCAGTTTCGTCCGAATGACAGCCCCTGGGGACAGCCCCAAC
ACCGACGGCATTCACATCGGAGATTCCACCAACATCAGAATTTCAAGAACTGTCATTCAG
ACCGGCGATGACTGCATTTCCATGGTTACAGGCAGCCGAAACATCGACATCTCCGATGTT
ACTTGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTAGGAAAATCCCCTGGAGAATTT
GTTACAGGCATAAATGTGAGAAATTGCACATTTATCGGAACTCAAAATGGGGCTAGGATC
AAAACTTGGGCTCCCTCTTTGTCAAGTGAGGCTTCTGATATATTTTTTGGTGACATTTAC
ATGCAAAATGTCAATAATCCAGTCCTCATTGATCAACAATACTGCCCATATCCTTCTTGC
AGCAATCTGGGACAGGACAATTCTAAAGTACAGATAAGCAATGTGACATTCAGTAACATA
TGGGGAACATCAAGTTCAAAGGTTGCAATCTCTTTAAAATGTAGTAAACTGGTGCCCTGT
AAGAATGTGCAGCTTAACAATATCAACTTGGCATACCACGGACGAGGAGGACCAGCCACG
TCTTCGTGTTTAAATGTGATTGGTGCTTCATATGGGAAACAATCTCCTCCTAGTTGTTTA
TGA

Peptide Sequence

PEP ID

XP_016465280.1
PEP Infomation

PREDICTED: exopolygalacturonase-like [Nicotiana tabacum]
Sequence

MVSLASATFGVCLFVFLSIANAQYYNSPLKFFNVLDYGAVADEKRDNSQAFLKAWEDACQ
WRGRSMVLIPYGTYMLRSVSFEGPCRSLMRFVIKGVLKAPTSPSLFNTNTWIGFRYINGL
VVKGGGYLDGQGASAWPYNDCSKNPHCMPLPVTLRFDFVTNSRIHHLRSINSKNSHINLF
ACNNINISFVRMTAPGDSPNTDGIHIGDSTNIRISRTVIQTGDDCISMVTGSRNIDISDV
TCGPGHGISIGSLGKSPGEFVTGINVRNCTFIGTQNGARIKTWAPSLSSEASDIFFGDIY
MQNVNNPVLIDQQYCPYPSCSNLGQDNSKVQISNVTFSNIWGTSSSKVAISLKCSKLVPC
KNVQLNNINLAYHGRGGPATSSCLNVIGASYGKQSPPSCL

Transcript Sequence

Gene sequence data has not been registered.